Services

AI for genomics

Artificial intelligence applied where it saves real time, validated against established methods.

• Machine learning models for classification and prediction from genomic data
• AI-assisted variant prioritization and interpretation
• Pattern discovery in large multi-sample datasets
• Model validation, documentation, and reproducible training

Genome and exome analysis

End-to-end processing of DNA sequencing data, from raw reads to annotated variants.

• Quality control and read trimming
• Alignment to reference genomes
• Germline and somatic variant calling (SNVs, indels, CNVs, SVs)
• Variant annotation, filtering, and prioritization
• Targeted panels and amplicon sequencing

Transcriptomics

Make sense of gene expression at bulk and single-cell resolution.

• Bulk RNA-seq quantification and differential expression
• Single-cell RNA-seq: QC, clustering, cell-type annotation
• Pathway and gene-set enrichment
• Publication-ready figures

Pipelines and infrastructure

Workflows built to be rerun, audited, and scaled.

• Nextflow and Snakemake pipeline development
• Containerization with Docker and Singularity
• Cloud and HPC deployment
• Pipeline review, optimization, and documentation

Research tools and custom software

Tools that expedite everyday research, plus purpose-built software when off-the-shelf options don't fit.

• Free browser tools: SeqBench, PrimerBench, CutBench, AlignBench, CodonBench, and VariantBench
• Web tools and interactive dashboards for your data
• LIMS and database integrations
• Automated reporting
• Training and handoff to your team